MSM Participants

IMAG wiki login list of MSM Participants

Name Project Email WGs
Geoffrey Abbott, Ph.D. Predictive MSM of Atrial Fibrillation for Therapy Development [email protected]  
Gary An, M.D. Agent-based Models to address the Crisis of Reproducibility and Precision Medicine [email protected] Population
Kurt Anderson, Ph.D. Framework for the Adaptive Multiscale Modeling of Biopolymers [email protected]  
Russ Altman, M.D., Ph.D. Physics-Based Simulation of Biological Structures [email protected]  
Bruce Ayati NIAMS: CORT Innovations to Assess and Forestall Post-Traumatic Osteoarthritis [email protected] Biomechanics, Cell-to-Macroscale
Portonovo Ayyaswamy Bridging multiple scales in modeling targeted drug nanocarrier delivery [email protected]  
Victor Barocas, Ph.D. Multiscale Modeling of Facet Capsule Mechanobiology; Multiscale Mechanics of Bioengineered Tissues [email protected]  
James (Jim) Bassingthwaighte, M.D., Ph.D. Software Integration between JSim and Systems Biology WorkbenchModeling for Heart, Lung, and Blood: From Cell to Organ; Adaptive Multi-Scale Model Simulation, Reduction and Integration for Cardiac Muscle Physiology [email protected] *Co-leader of Model and Data Sharing Working Group
Daniel Beard, Ph.D. Multi-Scale Modeling of the Heart in Metabolic Syndrome and Cardiovascular Disease, Mechanisms of Metabolic Dysfunction in Heart Disease [email protected] Multiscale Systems Biology Working Group
Scott Berceli, M.D., Ph.D. Multiscale Network Modeling of Hemodynamically-Driven Vascular Adaptation [email protected]  
Theodore Berger Predictive modeling of bioelectric activity on mammalian multilayered neuronal structures in the presence of supraphysiological electric fields [email protected] *Co-leader of Computational Neuroscience Working Group
Jeff Bischoff, Ph.D. Research Interests: Multiscale Joint Biomechanics [email protected]  
Michael Blinov National Resource for Cell Analysis and Modeling; www.ccam.uchc.edu; vcell.org [email protected]  
Danny Bluestein, Ph.D. Multiscale Modeling of Blood Flow and Platelet Mediated Thrombosis [email protected]  
Georgiy Bobashev Researching Social Dynamics of Local Methamphetamine Market [email protected]  
James Bower, Ph.D. GENESIS [email protected]  
Patrick M Boyle, PhD Simulation guidance of ablation therapy for persistent atrial fibrillation [email protected] Model and Data Sharing Working Group
James Brasseur, Ph.D. Micro-scale Transport as a Critical Link between Molecular-Scale Absorption and Macro-Scale Mixing in Gut Physiology and Function [email protected]  
Markus Buehler, Ph.D. Models to predict protein biomaterial performance [email protected] *Co-leader of IMuBEAM
David Cai Collaborative Research: Cortical Processing across Multiple Time- and Space-Scales http://www.cims.nyu.edu/~yisun/publication.html http://www.rpi.edu/~kovacg/ http://www.math.nyu.edu/~cai/Publications/index.html [email protected]  
William Cannon, Ph.D. Hierarchical, Multi-Objective Optimization of Microbial Community Proteomic Systems [email protected] *Co-leader of Theoretical and Computational Methods
Ross Carlson, Ph.D. Predictive Multiscale Modeling of Microbial Consortia Biofilms [email protected] *Co-leader of Cell-to-Macroscale Working Group
Xiaolin Cheng, Ph.D. Multiscale Mathematics and Simulations of Complex Biological Systems [email protected]  
Howard Chizeck, Sc.D. Adaptive Multi-Scale Model Simulation, Reduction and Integration for Cardiac Muscle Physiology http://nsr.bioeng.washington.edu [email protected]  
Yoonsuck Choe, Ph.D. Multi-Scale Imaging, Analysis, and Integration of Brain Networks [email protected]  
Mitchel J. Colebank, Ph.D. Multiscale modeling of cardiac and vascular mechanotransduction [email protected] Biomechanics; Digital Twins; Simulation in Healthcare
Brent Craven FDA project webpage [email protected] Biomechanics; Theoretical and Computational Methods; Committee on Credible Practice of Modeling & Simulation in Healthcare
Sharon Crook, Ph.D. NeuroML Standards and Tools for Multiscale Model Specification and Exchange [email protected]  
David Christini, Ph.D. Predictive MSM of Atrial Fibrillation for Therapy Development [email protected]  
Ming Dao, Ph.D. Multiscale Modeling and Parallel Simulations of Blood Flow in Cerebral Malaria and Sickle Cell Diseases [email protected]  
David D'Argenio, Ph.D. Biomedical Simulations Resource: Core Project #1 - Pharmacokinetic/Pharmacodynamic Systems Analysis [email protected]  
Suvranu De, Sc.D. A Self-Consistent Multiscale Method for Modeling the Effects of Neutron Irradiation on the Mechanical Properties of BCC and FCC Metals; Nonlinear Multiscale Modeling of 3D Woven Fiber Composites Under Ballistic Loading; Development of a Self-Consistent Multiscale Method for Coupled Nonlinear Micro Macro Analysis of Heterogeneous Explosives; http://acor.rpi.edu/http://www.springer.com/engineering/biomedical+eng/book/978-90-481-3574-5 [email protected]  
Thomas Deisboeck, M.D. Center for the Development of a Virtual Tumor, CViT https://www.cvit.org [email protected]  
Scott Delp, Ph.D. Physics-Based Simulation of Biological Structures [email protected]  
Angela DePace, Ph.D. Multi-scale modeling of genetic variation in a developmental network

[email protected]                 

 
Yasin Dhaher A Multi-Scale Modeling Construct of Knee Mechanics following ACL Reconstruction [email protected] *Co-leader of Biomechanics Working Group
Thomas Diacovo, M.D. Model of Platelet Adhesion and Thrombus Formation [email protected]  
Scott Diamond, Ph.D. (Talid Sinno, Lawrence (Skip) Brass) www.bloodsystemsbiology.org Blood Systems Biology] [email protected] Theoretical and Computational MethodsClinical and Translational Issues Working Group
David Eckmann, M.D., Ph.D. Bridging multiple scales in modeling targeted drug nanocarrier delivery // Targeted Microcarrier Design and Optimization [email protected] Clinical and Translational Issues Working Group
Uri Tzvi Eden Multiscale analysis and modeling of spatiotemporal dynamics in human epilepsy [email protected]  
Daniel Einstein 3D Imaging & Computer Model of the Respiratory Tract [email protected]  

Mounya Elhilali

Multi-scale modeling of the cocktail party problem

[email protected]

Computational Neuroscience

Ahmet Erdemir, Ph.D. Efficient Methods for Multi-Domain Biomechanical SimulationsPredicting Cell Deformation from Body Level Mechanical LoadsOpen Knee: A Three-Dimensional Finite Element Representation of the Knee Joint [email protected] Biomechanics Working GroupModel and Data Sharing Working Group, *Co-leader of Committee on Credible Practice of Modeling and Simulation in Healthcare
Arthur Erdman, Ph.D. Modeling, Simulation, and Visualization for Medical Device Design. http://ivlab.cs.umn.edu/NSFNIHBIGDATA/ [email protected]  
Stephen Eubank, Ph.D. Modeling Immunity to Enteric Pathogens (MIEP) [email protected]  
Ronan Fleming, Ph.D. Numerical Optimization Algorithms and Software for Systems Biology [email protected] Multiscale Systems Biology Working Group
Joanne Flynn, Ph.D. A multi-scale model to predict outcomes of immuno- modulation and drug therapy during TB [email protected]  
Alison Galvani Evaluating the social influences that impact vaccination decisions; Impacts of Individual and Social Behavior on Influenza Dynamics and Control; http://galvani.medicine.yale.edu/index.aspx [email protected] *Co-leader of Population Modeling Working Group
Marc Garbey Multiscale Network Modeling of Hemodynamically-Driven Vascular Adaptation [email protected] Clinical and Translational Issues Working Group
Guy Genin Cross-scale interactions between mineral and collagen for tendon-bone attachment [email protected] *Co-leader of IMuBEAM
Frank Gertler Modeling bi-directional signaling and cytoskeletal dynamics in 3D cell migrations [email protected]  
James Glazier CompuCell3D [email protected]  
Mark Gordon, Ph.D. Multiscale Mathematics and Simulations of Complex Biological Systems [email protected] [email protected]  
Richard Gray   [email protected]  
Weiyong Gu   [email protected] Biomechanics
Trent Guess, Ph.D. Dynamic Simulation of Joints Using Multi-Scale Modeling [email protected]  
Runesha B. Hakizumwami, Ph.D. Modeling, Simulation, and Visualization for Medical Device Design. http://ivlab.cs.umn.edu/NSFNIHBIGDATA/ [email protected]  
Randy Heiland, M.S. CompuCell3D [email protected]  
John Higgins Multiscale Modeling of Sickle Cell Anemia: Methods and Validation [email protected]  
Anthony Hunt, Ph.D. Media:Research_Description_for_MSM04May10.pdf http://biosystems.ucsf.edu/index.htm [email protected]  
Jay Humphrey, Ph.D. Evolving Mechanics of Intraluminal Thrombus: From Formation to Organization [email protected]  
Peter Hunter, Ph.D. International Union of Physiological Sciences Council Member [email protected] *Co-leader of Model and Data Sharing Working Group
Dov Jaron Multiscale, Transport-Dependent NO Signaling: Cells to Vascular Networks [email protected]  
Paul Jasper Numerical Tools for Analyzing Cell Signaling Circuits in Normal and Tumor Cells [email protected]  
Karl Jepsen Genetic Determination of Skeletal Fragility    
Yufang Jin, Ph.D. Mathematical Modeling of Matrix Metalloproteinase-9 Driven Left Ventricular Remodeling Post Myocardial Infarction [email protected] High Performance Computing Working Group
Wolfgang Kainz, PhD Development of a functional ultra-high resolution head model [email protected]  
Roger Kamm, Ph.D. Modeling bi-directional signaling and cytoskeletal dynamics in 3D cell migrations Multi-Scale Analysis of Cellular Force Transmission and Biochemical Activation [email protected]  
David Kaplan, Ph.D. Models to Predict Protein Biomaterial Performance [email protected] IMuBEAM
George Karniadakis, Ph.D. A Stochastic Molecular Dynamics Method for Multiscale Modeling of Blood Platelet Phenomena [email protected] Theoretical and Computational Methods
Daniel Keefe, Ph.D. Modeling, Simulation, and Visualization for Medical Device Design. http://ivlab.cs.umn.edu/NSFNIHBIGDATA/ [email protected]  
Michael King Model of Platelet Adhesion and Thrombus Formation [email protected] Multiscale Systems Biology Working Group
Denise Kirschner, Ph.D. A multi-scale model to predict outcomes of immuno- modulation and drug therapy during TB [email protected] Multiscale Systems Biology Working Group
Gregor Kovacic, Ph.D. Collaborative Research: Cortical Processing across Multiple Time- and Space-Scales http://www.cims.nyu.edu/~yisun/publication.html http://www.rpi.edu/~kovacg/ [email protected]  
Mark Kramer Multiscale analysis and modeling of spatiotemporal dynamics in human epilepsy [email protected]  
Joy Ku, Ph.D. Physics-Based Simulation of Biological Structureshttps://simtk.org/xml/index.xml [email protected] Model and Data Sharing Working Group
Niels Kuster   [email protected]  
Rob Kunz, Ph.D. Multi-Scale Human Respiratory System Simulations to Study the Health Effects of Aging, Disease and Inhaled Substances [email protected]  
Anthony (Tony) Ladd, Ph.D. Multi-Scale Modeling of Chemical-to-Mechanical Energy Conversion in Actin-Based Motility [email protected]  
Nicola Lai, Ph.D. (in place of Marco Cabrera) Time Course of Metabolic Adaptations During Loading and Unloading [email protected]  
Robert Latour, Ph.D.   [email protected] IMuBEAM
Gianluca Lazzi Predictive modeling of bioelectric activity on mammalian multilayered neuronal structures in the presence of supraphysiological electric fields [email protected]  
Peter Laz A Multi-Scale Finite Element Musculoskeletal Modeling Framework Applied to Current Issues in Joint Replacement [email protected]  
Jonathan Lederer Calcium Entrained Arrhythmias [email protected]  
Nicole Yee-Key Li-Jessen   [email protected]  
Ching-Long Lin, Ph.D. An integrative statistics-guided image-based multi-scale lung model; Multiscale Simulation of Gas Flow Distribution in the Human Lung [email protected] *Co-leader of Cell-to-Macroscale Working Group
Jennifer Linderman, Ph.D. A multi-scale model to predict outcomes of immuno- modulation and drug therapy during TB [email protected]  
Yaling Liu, Ph.D. Modeling Particle Shape Effect in Nanomedicine [email protected]  
Leslie Loew National Resource for Cell Analysis and Modeling; www.ccam.uchc.edu; vcell.org [email protected] Multiscale Systems Biology Working Group
Georg Luebeck, Ph.D. Scales of Carcinogenesis: Cells, Crypts and Cancer; Controlling Esophageal Cancer in the US.: A Colloraborative Modeling Project [email protected]  
Bill Lytton, M.D. Extension of NEURON Simulator for Simulation of Reaction-Diffusion in Neurons ; NEURON Simulator [email protected] Clinical & Translational; *Co-leader of Computational Neuroscience
Carlo Maley, Ph.D. Scales of Carcinogenesis: Cells, Crypts and Cancer [email protected]  
Parag Mallick Multi-scale Complex Systems Transdisciplinary Analysis of Response to Therapy [email protected]  
Madhav Marathe, Ph.D. Modeling Immunity to Enteric Pathogens (MIEP) [email protected] *Co-leader of Population Modeling Working Group
Roger Mark, M.D., Ph.D. Physionet [email protected] *Co-leader of Model and Data Sharing Working Group
Vasilis Marmarelis, Ph.D. Biomedical Simulations Resource (BMSR) [email protected] [Mathematical & Computational Methods]
Andrew McCulloch, Ph.D. Multi-Scale Modeling of the Mouse Heart: From Genotype to Phenotype http://cmrg.ucsd.edu, Multi-Scale Modeling of the Failing Heart for Cardiac Rysynchronization Therapy [email protected]  
Jill McNitt-Gray, Ph.D. http://www.asbweb.org/index.html ; http://dornsife.usc.edu/cf/faculty-and-staff/faculty.cfm?pid=1003520&CFID=1692145&CFTOKEN=13548813 [email protected]  
Michael Meyer-Hermann, Ph.D. Mathematical Modeling of the Migration in Germinal Centres [email protected]  
George Moody Physionet [email protected] Model and Data Sharing Working Group
James Moore, Ph.D. Lymphatic Fluid Flow Modeling with Active Network Components [email protected] Biomechanics Working Group
Ion Moraru National Resource for Cell Analysis and Modeling; www.ccam.uchc.edu; vcell.org [email protected]  
Lealem Mulugeta   [email protected] *Co-leader of Committee on Credible Practice of Modeling and Simulation in Healthcare
Wendy Murray Prosthesis Control by Forward Dynamic Simulation of the Intact Biomedical System [email protected]  
Mark Musen, M.D., Ph.D. The National Center for Biomedical Ontology [email protected]  
Sriram Neelamegham Systems Biology of Glycosylation [email protected]  
Sergey Nuzhdin    [email protected] *Co-leader of Population Modeling Working Group
Peter Ortoleva Intercellular Genomics of Subsurface Microbial Colonies [email protected]  
Manish Parashar http://nsfcac.rutgers.edu/people/parashar/ [email protected]  
Pras Pathmananthan, Ph.D.   [email protected]  
Abani Patra, Ph.D. http://www.mae.buffalo.edu/people/full_time/a_patra.php [email protected]  
Bernhard Palsson Numerical Optimization Algorithms and Software for Systems Biology [email protected]  
Linda Petzold, Ph.D. Stochastic Simulation Service: A Cloud Computing Framework for Modeling and Simulation [email protected] Theoretical and Computational Methods
Teresa Pitts, Ph.D. Regulation of Airway Protection [email protected] Computational Neuroscience Working Group
Sylvia Plevritis http://rsl.stanford.edu/plevritis/ Comparative Modeling of Lung Cancer Control Policies sylvia.plevritis.edu  
Aleksander Popel Predictive Experiment-Based Multiscale Models of Angiogenesis in Breast Cancer [email protected] Multiscale Systems Biology Working Group
Vito Quaranta Image Driven Multi-Scale Modeling to Predict Treatment Response in Breast Cancer [email protected] Multiscale Systems Biology Working Group
Ravi Radhakrishnan Bridging multiple scales in modeling targeted drug nanocarrier delivery // Lab URL [email protected] Multiscale Systems Biology Working Group; Theoretical and Computational Methods; *Co-leader of High Performance Computing Working Group
John Rice  

[email protected]

 
Peter Richardson A Stochastic Molecular Dynamics Method for Multiscale Modeling of Blood Platelet Phenomena [email protected]  
Paul Rullkoetter A Multi-Scale Finite Element Musculoskeletal Modeling Framework Applied to Current Issues in Joint Replacement [email protected]  
Ilya Rybak, Ph.D. Multiscale Model of Neural Control of Breathing [email protected]  
Gerald Saidel, Ph.D. (in place of Marco Cabrera) Time Course of Metabolic Adaptations During Loading and Unloading [email protected]  
Edward Sander, Ph.D. Controlling the Mechanobiology of Cutaneous Wounds to Reduce Hypertrophic Scar [email protected] *Co-leader of 
Terence Sanger, M.D., Ph.D. High Speed Simulation of Developmental Motor Disorders [email protected] *Co-leader of Clinical and Translational Issues Working Group
Michael Saunders Numerical Optimization Algorithms and Software for Systems Biology [email protected]  
Herbert Sauro, Ph.D. Software Integration between JSim and Systems Biology WorkbenchModeling for Heart, Lung, and Blood: From Cell to Organ [email protected] *Co-leader of Model and Data Sharing Working Group
Jay Schieber CISE: Multiscale Modeling to Develop a Cyberinfrastructure for the Dynamics of Flexible and Stiff Entangled Macromolecules http://polyhub.org/bin/view [email protected]  
Steven Schiff CRCNS Collaborative Research: Model-Based Control of Spreading Depression [email protected]  
Bill Schultz http://www-personal.umich.edu/~schultz/ [email protected]  
James Schwaber http://www.dbi.tju.edu [email protected]  
Timothy W. Secomb Multiscale modeling of cerebral blood flow and oxygen transport [email protected]  
Daniel Segre An Open Source Platform for Multi-Scale Spatially Distributed Simulations of Microbial Ecosystems [email protected]  
Terrence (Terry) Sejnowski, Ph.D. Integrated Empirical and Multiscale Modeling of Human Sleep Spindles [email protected]  
Kevin Shelburne A Multi-Scale Finite Element Musculoskeletal Modeling Framework Applied to Current Issues in Joint Replacement, http://www.du.edu/biomechanics [email protected]  
Yohannes Shiferaw MSM of Calcium Mediated Triggered Activity in the Heart [email protected]  
James (Jim) P. Sluka, Ph.D. Biocomplexity Institute and Multiscale Models Liver biology and Toxicology [email protected]  
Jeff Smith, Ph.D. Multiscale Model of Neural Control of Breathing [email protected]  
Jeremy Smith Multiscale Mathematics and Simulations of Complex Biological Systems [email protected]  
Subra Suresh, Sc.D. Multiscale Modeling and Parallel Simulations of Blood Flow in Cerebral Malaria and Sickle Cell Diseases [email protected]  
Maciej Swat, Ph.D. Multiscale Studies of Segmentation in Vertebrate Embryos [email protected]  
Dalin Tang, Ph.D. In Vivo IVUS Image-Based Modeling for Human Coronary Plaque Assessment [email protected]  
Michela Taufer, Ph.D. DAPLDS: A Dynamically Adaptive Protein-Ligand Docking System Based on Multi-Scale Modeling [email protected]  
Merryn Tawhai, Ph.D. Airway Hyperresponsiveness: From Molecule to Organ [email protected]  
Darryl Thelen A Multi-Scale Modeling Construct of Knee Mechanics following ACL Reconstruction [email protected]  
Ines Thiele Numerical Optimization Algorithms and Software for Systems Biology [email protected]  
Stavros Thomopoulos Cross-scale interactions between mineral and collagen for tendon-bone attachment [email protected] IMuBEAM
Natalia Trayanova Simulation guidance of ablation therapy for persistent atrial fibrillation
Resynchronizing the Failing Heart: Insights from a Multiscale Cardiac Model
[email protected]  
Raj Vadigepalli "Modeling Central Autonomic Regulatory Network Adaptation to Hypertension” and “Integrated Modeling of Adaptive Neuronal Regulation” [email protected] *Co-leader of Computational Neuroscience Working Group
Peter Vekilov Multiscale Modeling of Sickle Cell Anemia: Methods and Validation [email protected]  
Marco Viceconti Insigneo Institute [email protected]  
Paolo Vicini, Ph.D. Research Interests: Pharmacokinetics, Pharmacodynamics, Biotherapeutics, Translational Research, Model Identification and Parameter Estimation [email protected]  
Yoram Vodovotz, Ph.D. Mathematical Modeling of Inflammation in ARDS [email protected] Multiscale Systems Biology Working Group; Clinical and Translational Issues
Jeff Weiss, Ph.D. FEBio-Finite Elements for Biomechanics and Biophysics [email protected]  
Ron White, Ph.D. http://sdmines.sdsmt.edu/sdsmt/directory/personnel/rwhite [email protected]  
Pai-Yei Whung   [email protected] Population Modeling Working Group
Bridget Wilson, Ph.D. Mapping and Modeling ErbB Receptor Membrane Topography [email protected]  
Beth Winkelstein Multiscale Modeling of Facet Capsule Mechanobiology [email protected] *Co-leader of Biomechanics Working Group
Raimond Winslow Cardio Vascular Research Grid Project, http://www.cvrgrid.org    
Joyce Wong, Ph.D. Models to predict protein biomaterial performance [email protected] IMuBEAM
Tom Yankeelov Image Driven Multi-Scale Modeling to Predict Treatment Response in Breast Cancer [email protected] Clinical and Translational Issues Working Group
Kaiming Ye   [email protected]  
Muhammad Zaman Modeling bi-directional signaling and cytoskeletal dynamics in 3D cell migrations [email protected] *Co-leader of Biomechanics Working Group
Yanhang Zhang Multi-Scale Integration of Extracellular Matrix Mechanics in Vascular Remodeling [email protected] Biomechanics Working Group
Xiaobo Zhou, Ph.D. Modeling the Growth of the MIC Niche at the System Level [email protected]  
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